Software

Key downloadable code from the PhyloFacts repository.

SCI-PHY version 1 (download)

The original implementation of the SCI-PHY algorithm that builds subfamily HMMs. However, the subfamily HMMs are in UCSC SAM format.

SCI-PHY version 2 (download)

The current version of the SCI-PHY code that returns a subfam file showing the subfamily multiple sequence alignments. Subfamily HMM files can be created using HMMER code.