Bioinformatics Seminar

An occasional seminar series on bioinformatics, at Berkeley and beyond!

Title: Targeting Parasites Through Comparative Genomics and Systems Biology

Speaker: Prof. John Parkinson, Molecular Structure & Function, Hospital for Sick Children, University of Toronto

Time: 12:00-1:00pm, Wednesday, October 29th, 2008

Place: 177 Stanley Hall

Abstract:
Parasites from multicellular worms to single celled protists represent a significant global healthcare challenge. Despite their importance, relatively few effective treatments and vaccines are currently available. Together with the recent emergence of strains resistant to current drugs, there is an urgent need to develop new therapeutics. To meet this need, several international consortia have been initiated to generate vast amounts of sequence data for many of these parasites. In initial surveys of parasitic nematode (worm) and apicomplexan (single celled protist) sequence data, we have identified that a large proportion of sequence innovation within these species occurs at the level of individual genera. The challenge now is to identify from these myriads of newly identified genes, those that represent the most effective drug targets. Preliminary studies exploiting these exceptional sequence resources together with computational and functional genomics, and proteomics datasets are beginning to reveal specialized parasite genes and processes required for the establishment of parasite infections in their hosts, driving new opportunities for designing potent anti-parasitic strategies. Our lab is currently focused on a systems-based strategy, exploiting parasite metabolism to identify critical enzymes and pathways required for mediating parasite replication and persistence.



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