Members

Principal Investigator
Kimmen Sjölander, Ph.D.


Lab Alumni

Bushra Samad

PhD Student

Phylogenomic methods for microbial (meta)genome functional and taxonomic annotation


Curt Hansen

PhD Student

Simultaneous co-estimation and refinement of phylogenetic trees and multiple sequence alignments

 

Mohammad Azimi

Graduate Researcher

Hybrid Protein Nucleotide Phylogenetic Trees

 

Nima Cyrus Emami

Undergraduate Researcher

Hybrid Protein Nucleotide Phylogenetic Trees

 

Cyrus Afrasiabi

Programmer

Algorithms





Ajith Warrier

Associate Specialist

Algorithms, Web programming with Django, Python and Javascript programming


Yaoqing Shen, Ph.D.

Postdoctoral Scholar

Metagenome Analysis


Ruchira Datta, Ph.D.

Postdoctoral Scholar

Ortholog identification, Pathway inference, Hyperdimensional network


Shailen Tuli

Programmer

Algorithm design, Web programming, Python and Ruby programming, Open source software


Grant Shoffner

Research Associate

Domain Architecture Rearrangement


Glen Jarvis

Programming Associate

Bioinformatics programming, Linux/Web/Database Administration



John Davidson

Programmer

Bioinformatics programming, Open source software development, Web programming and design


Christoph Neyer

Undergraduate Student

Assessing methods for orthology detection


Sriram Sankararaman

Graduate Student, EECS

Probabilistic models for enzyme active sites and specificity determinates


Dean Starrett, Ph.D.

Postdoctoral Scholar

Muliple alignment, Phylogeny inference, Protein interaction prediction


Bryan Kolaczkowski, Ph.D.

Postdoctoral Scholar

Reconstructing the evolutionary history of Apicomplexa
 Paper


Nandini Krishnamurthy, Ph.D.

Postdoctoral Scholar

FlowerPower phylogenomic clustering
Paper


Duncan Brown, Ph.D.

Graduate Student, BioE

Automating subfamily classification and subfamily HMM development
Paper


Carolina Dallett

Graduate Student, PMB

Identification of evolutionarily conserved regions in proteins


Raffi Hagopian

Undergraduate Student

Multiple Sequence Alignment/SATCHMO development
Paper


Jake Gunn Glanville

Undergraduate Student

Phylobuilder and other webserver development
Paper


Christopher Meacham, Ph.D.

Programmer

PhyloScope phylogenetic tree visualization software and other software development
Paper


Terry Farrah

Programmer

Protein structure prediction


Xia Jiang

PhD student

Protein structure prediction

Yannet Interian

Postdoctoral scholar

Protein-protein interaction prediction

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