PhyloFacts downloads

Downloads for all PhyloFacts families

• Release 1: August 1, 2011 (Full release)
• Hidden Markov models (HMMs) (4.6GB tarred gzipped file) 
  
• Multiple sequence alignments (1.8GB bzipped file) 
  
• Phylogenetic Trees (306MB bzipped file) 
  
• Summary data (114MB bzipped file)
• Release 2: September 08, 2011 (Incremental release) 
• Hidden Markov models (HMMs) (541 MB bzipped file)
• Multiple sequence alignments (304MB bzipped file)
• Phylogenetic Trees (31 MB bzipped file)
• Summary data (25MB bzipped file)

Downloads for PhyloFacts families built on Pfam domains

• Multiple sequence alignments (2.2GB .tar.gz file)
• Phylogenetic Trees (177MB .tar.gz file)
• Hidden Markov models (HMMs) (387MB .tar.gz file)
• Alignments, Trees, and HMMs (2.8GB .tar.gz file)

Downloads for PhyloFacts families targeting specific species

• Homo sapiens (9606) - Alignments, trees, and HMMs (2.3GB .tar.gz file)
• Arabidopsis thaliana (3702) - Alignments, trees, and HMMs (1.8GB .tar.gz file)
• Eschericia coli (83333) - Alignments, trees, and HMMs (2.1GB .tar.gz file)
• Saccharomyces cerevisiae (559292) - Alignments, trees, and HMMs (1.0GB .tar.gz file)
• Drosophila melanogaster (7227) - Alignments, trees, and HMMs (1.6GB .tar.gz file)
• Mus musculus (10090) - Alignments, trees, and HMMS (2.4GB .tar.gz file)
• Rattus norvegicus (10116) - Alignments, trees, and HMMs (2.2GB .tar.gz file)
• Schistosoma mansoni (6183) - Alignments, trees, and HMMS (1.1GB .tar.gz file)
• Schizosaccharomyces pombe (284812) - Alignments, trees, and HMMs (1.1GB .tar.gz file)
• Mycobacterium tuberculosis (83332) - Alignments, trees, and HMMs (7.1MB .tar.gz file)
• Bacillus subtilis (224308) - Alignments, trees, and HMMs  (1.8GB .tar.gz file)
• Helicobacter pylori B38 (592205) - Alignments, trees, and HMMs (225MB .tar.gz file)
• Geobacter sulfurreducens (243231) - Alignments, trees, and HMMs (1.5GB .tar.gz file)
• Rhodobacter sphaeroides (557760) - Alignments, trees, and HMMs (1.5GB .tar.gz file)

Phylo4j downloads

• Entire Neo4j database directory for phylo4j - a graph db of protein information (21.7GB .tar.gz file)