BPG home  |  BPG resources  |  SATCHMO home  |  New SATCHMO run  |  Help

 

SATCHMO

                                      ;     

Simultaneous Alignment and Tree Construction using Hidden Markov mOdels. SATCHMO simultaneously constructs a tree and a set of multiple sequence alignments, one for each internal node of the tree. More information.
Paste sequences in FASTA format:
(Please, no more than 100 sequences, and only 5 submissions per day.)        
OR
Upload FASTA file:
 
Send email to: (optional)
Subject line:
   


References to the SATCHMO algorithm or software should cite this paper: Edgar, R., and Sjölander, K., "SATCHMO: Sequence Alignment and Tree Construction using Hidden Markov models," Bioinformatics. 2003 Jul 22; 19(11):1404-11. Oxford University Press access.

Thanks to Michael Tung for enhancements to SATCHMO algorithms.


SATCHMO is available for download here.
Email questions or comments to phylo.