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This library contains 783 family HMMs and 5,605 subfamily HMMs.

  Protein families (783 books)
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 0 1 2 3 4 5 6 7 8 9   Families per page:
Aa  Ab  Ac  Ad  Ah  Al  Am  An  Ap  Ar  As  At 
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Bpg
accession
Family name No.
Seqs
No. sub-
families
Type Struc-
ture
bpg078793 AAA family ATPase, putative 1   1   Singleton YES
bpg078430 Abc transporter, putative 4   1   Global homology NO
bpg078029 ABC transporter, putative (related) 9   2   Global homology YES
bpg078545 Acetyl CoA synthetase, putative 3   1   Global homology YES
bpg078158 Acetyl-coenzyme a synthetase (related) 4   1   Global homology YES
bpg078076 Acetylornithine aminotransferase (related) 550   14   Global homology YES
bpg078122 Acid phosphatase, putative 10   2   Global homology YES
bpg078166 Acyl-CoA synthetase 1   1   Singleton YES
bpg078189 Acyl-CoA synthetase 1   1   Singleton YES
Adenosylhomocysteinase 411   20   Global homology YES
Adenylosuccinate lyase 429   18   Global homology YES
Adenylosuccinate synthetase 557   45   Global homology YES
ADP-ribosylation factor GTPase-activating protein (related) 22   7   Global homology YES
ADP-ribosylation factor GTPase-activating protein 2 (related) 61   8   Global homology YES
bpg078760 AH receptor-interacting protein (related) 56   13   Global homology YES
bpg078783 Alanine--tRNA ligase, putative 1   1   Singleton YES
bpg078681 Aldo-keto reductase, putative 1   1   Global homology YES
bpg078016 Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (related) 434   17   Global homology YES
bpg078273 Alpha/beta hydrolase fold (related) 285   48   Global homology YES
bpg078187 Alpha/beta hydrolase fold (related) 343   67   Global homology YES
bpg078347 Alpha/beta hydrolase protein, putative 1   1   Singleton YES
bpg078628 Aminoalcoholphosphotransferase (related) 135   25   Global homology NO
bpg078402 Aminomethyltransferase 547   39   Global homology YES
bpg078821 Aminopeptidase, putative 4   1   Global homology YES
bpg078599 Aminopeptidase, putative 1   1   Singleton YES
bpg078795 AMP deaminase, putative 4   1   Global homology YES
bpg078427 Anion-transporting ATPase (related) 142   22   Global homology YES
bpg078199 Ankyrin repeat protein, putative 34   5   Global homology YES
bpg078186 AP endonuclease 1   1   Singleton YES
bpg078160 Apicomplexan specific Pf 23612804 and Py 23478322 9   1   Global homology NO
bpg078305 Apurinic/apyrimidinic endonuclease Apn1 2   1   Global homology YES
bpg078162 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21 (related) 21   3   Global homology NO
bpg078090 Arginase 5   1   Global homology YES
bpg078176 Arginine N-methyltransferase, putative (related) 8   1   Global homology YES
bpg078216 Arginyl-tRNA synthetase 450   30   Global homology YES
bpg078269 Asparagine--t RNA ligase, putative 3   1   Global homology YES
bpg078177 Asparagine--tRNA ligase, putative 5   1   Global homology YES
bpg078125 Asparagine--tRNA ligase, putative 1   1   Singleton YES
bpg078203 Asparagine-rich protein 1   1   Singleton YES
bpg078824 Aspartate carbamoyltransferase (related) 24   3   Global homology YES
bpg078715 Aspartate--tRNA ligase, putative 2   1   Global homology YES
bpg078380 Aspartyl protease, putative 3   1   Global homology YES
bpg078194 ATP dependent RNA helicase, putative 1   1   Singleton YES
bpg078461 ATP synthase lipid-binding protein, mitochondrial, putative 4   1   Global homology NO
bpg078412 ATP synthase subunit beta 319   2   Global homology YES
bpg078223 ATP-dependant helicase, putative 1   1   Singleton YES
bpg078759 ATP-dependant RNA helicase, putative (related) 14   4   Global homology NO
bpg078278 ATP-dependent Clp protease proteolytic subunit 353   25   Global homology YES
bpg078535 ATP-dependent Clp protease proteolytic subunit 4   1   Global homology YES
bpg078842 ATP-dependent Clp protease, putative 1   1   Singleton YES
bpg078526 ATP-dependent DEAD box helicase, putative 1   1   Singleton NO
bpg078558 ATP-dependent DNA helicase, putative 2   1   Global homology YES
bpg078359 ATP-dependent helicase, putative 2   1   Global homology YES
bpg078511 ATP-dependent helicase, putative 2   1   Global homology YES
bpg078400 ATP-dependent metalloprotease, putative (related) 7   1   Global homology YES
bpg078396 ATP-dependent phosphofructokinase, putative 1   1   Singleton YES
bpg078233 ATP-dependent protease, putative 1   1   Singleton YES
bpg078212 ATP-dependent RNA helicase DDX1 18   4   Global homology YES
bpg078415 ATP-dependent RNA helicase DHX8 (related) 42   4   Global homology YES
bpg078543 ATP-dependent RNA helicase HAS1 (related) 32   5   Global homology YES
bpg078585 ATP-dependent RNA helicase prh1, putative 4   1   Global homology NO
bpg078692 ATP-dependent RNA Helicase, putative 4   1   Global homology YES
bpg078182 ATP-dependent RNA helicase, putative 4   1   Global homology YES
bpg078589 ATP-dependent RNA helicase, putative 1   1   Singleton YES
bpg078609 ATP-dependent rRNA helicase RRP3 (related) 52   6   Global homology YES
bpg078165 ATP-dept. acyl-coa synthetase (related) 7   1   Global homology YES
bpg078501 ATP-dept. acyl-coa synthetase, putative 1   1   Singleton YES
bpg078462 ATPase, putative 2   1   Global homology YES
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