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PhyloFacts plant disease and stress resistance library. This resource is supported in part by a grant from the National Science Foundation, Presidential Early Career Award in Science and Engineering (PECASE) Program, DBI-0238311.
 

This library contains 145 family HMMs and 3,649 subfamily HMMs.

  Protein families (145 books)
Bpg
accession 		Family name No.
Seqs 		No. sub-
families 		Type Struc-
ture
bpg000741 AAA ATPase 603   87   Other YES
bpg002077 ABC Transporter family : P glycoprotein-like 294   53   Pending YES
bpg002078 ABC transporter I 220   36   Pending YES
bpg000743 AC4 10   2   Global homology NO
bpg000742 Acetylglutamate kinase 22   10   Global homology YES
bpg002079 AIG1 family 61   11   Other YES
bpg080868 AIG2 94   36   Global homology YES
bpg000720 AIG2 family 17   3   Pending YES
bpg000725 AKR2 family 14   1   Global homology YES
bpg000712 Ankyrin repeat TM family 20   5   Pending YES
bpg002158 Antifungal plant defensins 37   7   Conserved region YES
bpg000574 AP2 domain 306   9   Domain NO
bpg071821 AT5G58600 PMR5 92   15   Global homology NO
bpg071825 AT5G58600-conserved-region 346   25   Conserved region NO
bpg000550 Avr3a 10   2   Global homology NO
bpg000578 avrPphB avirulence protein 3   1   Pending NO
bpg002145 AvrPphC 10   2   Global homology YES
bpg000730 Beta 1,3-endoglucanase family 56   4   Global homology YES
bpg000729 BG2 family 222   30   Pending YES
bpg000707 Bs2 149   24   Pending YES
bpg000715 Cation transporter family 24   1   Other NO
bpg000708 Cf-4 family 84   17   Pending YES
bpg000706 Cf-5 family 53   11   Pending YES
bpg000710 Cf-9 family 99   14   Pending YES
bpg000576 CF-RLP conserved domain 48   7   Domain YES
bpg005003 CF2 47   5   Other YES
bpg000726 Chitinase family 293   15   Pending YES
bpg000727 CNGC2 family 40   3   Pending YES
bpg000728 CNGC4 family 44   5   Pending YES
bpg000700 COI1 family 19   2   Global homology NO
bpg002669 Cytoplasmic effector Avr1b 7   2   Global homology NO
bpg002072 Dehydrin 16   1   Global homology NO
bpg000089 Dirigent (from PFAM full MSA) 84   8   Domain NO
bpg000677 DREB 194   42   Pending YES
bpg000579 EDS1 7   1   Global homology NO
bpg005491 Eukaryotic cysteine-type peptidase 863   197   Other YES
bpg000008 FBOX 2075   500   Domain NO
bpg000057 FBOX (book2) 2035   424   Motif NO
bpg000056 FBOX (from PFAM) 600   2   Motif NO
bpg057357 FLS2 75   14   Other YES
bpg002160 Germin 186   23   Pending YES
bpg000713 Glycosyl hydrolase family 236   34   Other YES
bpg002152 Granulysin domain 68   22   Conserved region YES
bpg004925 HopG1 8   1   Other NO
bpg002076 HR protein family 17   1   Pending NO
bpg071833 Hyaloperonospora parasitica avirulence protein ATR1 6   1   Global homology NO
bpg000709 I2 family 88   22   Pending YES
bpg033670 IRRI-RIX0000062 80   17   Global homology YES
bpg033671 IRRI-RIX0000104 314   70   Other YES
bpg033668 IRRI-RIX0000169 270   45   Other NO
bpg033672 IRRI-RIX0000170 280   15   Other YES
bpg033673 IRRI-RIX0000523 18   1   Global homology NO
bpg033674 IRRI-RIX0000600 18   2   Other YES
bpg033675 IRRI-RIX0000984 17   1   Other YES
bpg034195 IRRI-RIX0001711 165   7   Global homology NO
bpg033677 IRRI-RIX0001977 8   2   Other YES
bpg033676 IRRI-RIX0002999 360   21   Other YES
bpg033678 IRRI-RIX0003306 126   7   Other YES
bpg033679 IRRI-RIX0004077 31   3   Other NO
bpg033680 IRRI-RIX0004964 550   54   Other YES
bpg033681 IRRI-RIX0005628 63   4   Other NO
bpg034197 IRRI-RIX0005755 168   14   Other YES
bpg034196 IRRI-RIX0008677 117   12   Other YES
bpg034194 IRRI-RIX0011619 304   17   Other YES
bpg034198 IRRI-RIX0011643 172   16   Other YES
bpg033669 IRRI-RIX0013240 227   18   Other YES
bpg034199 IRRI-RIX0014783 29   5   Other NO
bpg034200 IRRI-RIX0016165 227   21   Global homology YES
bpg034201 IRRI-RIX0018955 109   8   Other NO
bpg034202 IRRI-RIX0019405 397   16   Other YES
bpg034203 IRRI-RIX0019934 16   1   Global homology YES
bpg071823 Leaf senescence protein-like 129   33   Conserved region NO
bpg071826 Leaf senescence protein-like 330   40   Conserved region NO
bpg000577 Longevity assurance 55   12   Pending NO
bpg000051 LRR 2652   1   Pending NO
bpg000078 LRR (24aa subtype in plant RLPs) 211   1   Pending NO
bpg000079 LRR (24aa subtype) book 2 1451   1   Pending NO
bpg000084 LRRCT 220   66   Pending NO
bpg000083 LRRNT 323   66   Pending NO
bpg002136 LSD1 5   1   Global homology NO
bpg002075 Magmas-like protein family 35   4   Global homology NO
bpg000696 Mi-1 family 14   3   Other YES
bpg000731 MLO12 family 39   2   Pending NO
bpg000714 MLO13 41   6   Pending NO
bpg000683 N 73   11   Pending YES
bpg000711 N-myristoyl Transferase 76   10   Pending YES
bpg002090 NAC2 protein 12   6   Global homology YES
bpg000679 NDR1 55   14   Pending NO
bpg000703 NPR1 25   2   Global homology YES
bpg002252 NRAMP 150   12   Global homology NO
bpg000737 PDB structure 1XHSA: Hypothetical Protein Ytfp From Escherichia Coli. 106   47   Domain YES
bpg000152 PELLE (IRAK) 35   13   Pending NO
bpg000091 Pentapeptide 908   1   Pending NO
bpg000718 Peroxidase family 544   77   Pending YES
bpg000080 PGIP 31   2   Global homology NO
bpg000081 PGIP-Nterm 31   1   Motif YES
bpg057992 Plant defensins 122   10   Global homology YES
d1ayj__ Plant defensins - 1ayj 48   11   Domain YES
d1brz__ Plant defensins - 1brz 8   2   Domain YES
d1gps__ Plant defensins - 1gps 100   13   Domain YES
d1jkza_ Plant defensins - 1jkz 101   12   Domain YES
d1jxca_ Plant defensins - 1jxc 15   2   Domain YES
bpg000575 Plant Defensins II 106   19   Pending YES
bpg000680 Plant drought-induced proteins 7   3   Global homology NO
bpg005632 Plant LRR proteins (putative RLPs) 11   4   Global homology YES
bpg000016 Plant RLK TM domain 42   1   Motif NO
bpg002172 Protein kinases 280   76   Pending YES
bpg000740 RAD3 family 50   9   Pending NO
bpg000719 RAR1 10   4   Pending NO
bpg002089 RCC1 family 99   26   Pending YES
bpg002081 RCC1/Zn finger family 20   1   Pending YES
bpg000011 RIN4 10   5   Pending NO
bpg000554 RLP-like cluster 16   4   Pending YES
bpg000521 RPM1 29   8   Pending YES
bpg000520 RPM1 nterm 317   90   Domain NO
bpg000702 RPP4 22   2   Pending YES
bpg057330 RPS4-like 45   11   Other YES
bpg002156 Saposin-like proteins 145   46   Conserved region YES
bpg000682 SGT1 41   9   Pending NO
bpg002253 SON1 249   34   Pending NO
bpg000082 Stress responsive dimeric alpha+beta barrel domain 43   12   Domain NO
bpg058064 Strictosidine synthase domain 512   81   Domain YES
bpg000716 TGA family 42   2   Pending NO
bpg000717 Thionin 65   8   Pending YES
bpg002259 TIR extended 1057   209   Domain YES
bpg020932 TIR-domain containing 611   148   Domain YES
bpg057335 Tir_only 82   2   Other NO
bpg000074 TM domain in plant RLPs and RLKs 43   15   Pending NO
bpg000076 TM domain RLK subtype book2 55   1   Pending NO
bpg000077 TM region for plant RLPs (book 3) 22   3   Domain NO
bpg000583 TNLW: TIR-NBS-LRR-WRKY proteins (Arabidopsis) 3   1   Global homology YES
bpg002135 TNT plants 3   1   Conserved region NO
bpg002615 Toll Interleukin Receptor (TIR) 792   144   Domain YES
bpg000006 TPR quarantaine repeat 181   17   Motif NO
bpg000053 TPR40 domain 84   4   Conserved region NO
bpg002133 TPR42 book3 795   1   Motif NO
bpg000003 TransMembrane from Arab RLP 46   2   Motif NO
bpg002088 Ubiquitin hydrolase 54   11   Global homology YES
bpg002085 UBP 9   3   Global homology YES
bpg002084 USP family 10   3   Global homology NO
bpg002087 USP family - book 2 34   4   Pending YES
bpg002086 Usp22 18   6   Global homology YES
bpg000705 Ve2-related 48   11   Pending YES
bpg000684 Xa21 family 217   35   Pending YES
bpg004945 XP_478746 43   10   Global homology YES
bpg057328 2Tir 4   2   Global homology NO


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