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Browse: Innate Immunity

 

This library contains 194 family HMMs and 4,433 subfamily HMMs.

  Protein families (194 books)
Bpg
accession
Family name No.
Seqs
No. sub-
families
Type Struc-
ture
bpg000741 AAA ATPase 603   87   Other YES
bpg002077 ABC Transporter family : P glycoprotein-like 294   53   Pending YES
bpg002078 ABC transporter I 220   36   Pending YES
bpg000743 AC4 10   2   Global homology NO
bpg000742 Acetylglutamate kinase 22   10   Global homology YES
bpg002079 AIG1 family 61   11   Other YES
bpg080868 AIG2 94   36   Global homology YES
bpg000720 AIG2 family 17   3   Pending YES
bpg000725 AKR2 family 14   1   Global homology YES
bpg000712 Ankyrin repeat TM family 20   5   Pending YES
bpg002158 Antifungal plant defensins 37   7   Conserved region YES
bpg000574 AP2 domain 306   9   Domain NO
bpg002267 Argonaute-related III 102   23   Conserved region YES
bpg057341 Arm, Sam and Tir 6   1   Other NO
bpg057337 Arm-like, Sam and Tir 6   1   Other NO
bpg071821 AT5G58600 PMR5 92   15   Global homology NO
bpg071825 AT5G58600-conserved-region 346   25   Conserved region NO
bpg002104 Attacin (Insects) 55   5   Pending NO
bpg000550 Avr3a 10   2   Global homology NO
bpg000578 avrPphB avirulence protein 3   1   Pending NO
bpg002145 AvrPphC 10   2   Global homology YES
bpg000730 Beta 1,3-endoglucanase family 56   4   Global homology YES
bpg002148 Beta defensin 93   17   Conserved region YES
bpg000729 BG2 family 222   30   Pending YES
bpg000707 Bs2 149   24   Pending YES
bpg002116 c-FOS 71   9   Pending YES
bpg000715 Cation transporter family 24   1   Other NO
bpg000708 Cf-4 family 84   17   Pending YES
bpg000706 Cf-5 family 53   11   Pending YES
bpg000710 Cf-9 family 99   14   Pending YES
bpg000576 CF-RLP conserved domain 48   7   Domain YES
bpg005003 CF2 47   5   Other YES
bpg011063 CG6124-PA 20   7   Other YES
bpg000726 Chitinase family 293   15   Pending YES
bpg000727 CNGC2 family 40   3   Pending YES
bpg000728 CNGC4 family 44   5   Pending YES
bpg000700 COI1 family 19   2   Global homology NO
bpg002669 Cytoplasmic effector Avr1b 7   2   Global homology NO
d1dfna_ Defensin - 1dfn 86   12   Domain YES
bpg002072 Dehydrin 16   1   Global homology NO
bpg000089 Dirigent (from PFAM full MSA) 84   8   Domain NO
bpg002275 Double-stranded RNA-binding domain 1STU 664   67   Domain YES
bpg000677 DREB 194   42   Pending YES
bpg002274 Drosha 13   1   Pending YES
bpg002276 DSRM extended 957   130   Conserved region YES
bpg002280 DUF283 extended 91   23   Domain NO
bpg000579 EDS1 7   1   Global homology NO
bpg002150 Elafin 68   12   Pending YES
bpg005491 Eukaryotic cysteine-type peptidase 863   197   Other YES
bpg000008 FBOX 2075   500   Domain NO
bpg000057 FBOX (book2) 2035   424   Motif NO
bpg000056 FBOX (from PFAM) 600   2   Motif NO
bpg057357 FLS2 75   14   Other YES
bpg002149 Galectin 90   7   Pending YES
bpg002160 Germin 186   23   Pending YES
bpg000713 Glycosyl hydrolase family 236   34   Other YES
bpg002151 Granulysin 12   3   Pending YES
bpg002152 Granulysin domain 68   22   Conserved region YES
bpg001172 HIV Type I Enhancer binding protein 13   3   Pending YES
bpg004925 HopG1 8   1   Other NO
bpg002076 HR protein family 17   1   Pending NO
bpg071833 Hyaloperonospora parasitica avirulence protein ATR1 6   1   Global homology NO
bpg000709 I2 family 88   22   Pending YES
bpg007284 IL1RAPL-2 related protein 8   1   Global homology YES
bpg004949 Inhibitor of Apoptosis 31   3   Global homology YES
bpg002194 Inhibitor of nuclear factor kappa-B kinase 29   5   Pending YES
bpg001877 Interleukin-1 receptor accessory protein 40   9   Global homology YES
bpg033670 IRRI-RIX0000062 80   17   Global homology YES
bpg033671 IRRI-RIX0000104 314   70   Other YES
bpg033668 IRRI-RIX0000169 270   45   Other NO
bpg033672 IRRI-RIX0000170 280   15   Other YES
bpg033673 IRRI-RIX0000523 18   1   Global homology NO
bpg033674 IRRI-RIX0000600 18   2   Other YES
bpg033675 IRRI-RIX0000984 17   1   Other YES
bpg034195 IRRI-RIX0001711 165   7   Global homology NO
bpg033677 IRRI-RIX0001977 8   2   Other YES
bpg033676 IRRI-RIX0002999 360   21   Other YES
bpg033678 IRRI-RIX0003306 126   7   Other YES
bpg033679 IRRI-RIX0004077 31   3   Other NO
bpg033680 IRRI-RIX0004964 550   54   Other YES
bpg033681 IRRI-RIX0005628 63   4   Other NO
bpg034197 IRRI-RIX0005755 168   14   Other YES
bpg034196 IRRI-RIX0008677 117   12   Other YES
bpg034194 IRRI-RIX0011619 304   17   Other YES
bpg034198 IRRI-RIX0011643 172   16   Other YES
bpg033669 IRRI-RIX0013240 227   18   Other YES
bpg034199 IRRI-RIX0014783 29   5   Other NO
bpg034200 IRRI-RIX0016165 227   21   Global homology YES
bpg034201 IRRI-RIX0018955 109   8   Other NO
bpg034202 IRRI-RIX0019405 397   16   Other YES
bpg034203 IRRI-RIX0019934 16   1   Global homology YES
bpg071823 Leaf senescence protein-like 129   33   Conserved region NO
bpg071826 Leaf senescence protein-like 330   40   Conserved region NO
bpg000577 Longevity assurance 55   12   Pending NO
bpg000051 LRR 2652   1   Pending NO
bpg000078 LRR (24aa subtype in plant RLPs) 211   1   Pending NO
bpg000079 LRR (24aa subtype) book 2 1451   1   Pending NO
bpg000084 LRRCT 220   66   Pending NO
bpg000083 LRRNT 323   66   Pending NO
bpg002136 LSD1 5   1   Global homology NO
bpg002075 Magmas-like protein family 35   4   Global homology NO
bpg000696 Mi-1 family 14   3   Other YES
bpg000731 MLO12 family 39   2   Pending NO
bpg000714 MLO13 41   6   Pending NO
bpg057340 MYD88 24   2   Other YES
bpg002098 MYD88 28   2   Pending YES
bpg000683 N 73   11   Pending YES
bpg000711 N-myristoyl Transferase 76   10   Pending YES
bpg002090 NAC2 protein 12   6   Global homology YES
bpg011061 NACHT (PFAM) 182   47   Domain NO
bpg007312 NALP1 5   2   Other YES
bpg000679 NDR1 55   14   Pending NO
bpg003727 Neuronal apoptosis inhibitory protein 31   1   Pending YES
bpg000703 NPR1 25   2   Global homology YES
bpg002252 NRAMP 150   12   Global homology NO
bpg000737 PDB structure 1XHSA: Hypothetical Protein Ytfp From Escherichia Coli. 106   47   Domain YES
bpg000152 PELLE (IRAK) 35   13   Pending NO
bpg000091 Pentapeptide 908   1   Pending NO
bpg000718 Peroxidase family 544   77   Pending YES
bpg000080 PGIP 31   2   Global homology NO
bpg000081 PGIP-Nterm 31   1   Motif YES
bpg002147 PGRP 98   14   Conserved region YES
bpg002277 PIWI 197   55   Domain NO
bpg057992 Plant defensins 122   10   Global homology YES
d1ayj__ Plant defensins - 1ayj 48   11   Domain YES
d1brz__ Plant defensins - 1brz 8   2   Domain YES
d1gps__ Plant defensins - 1gps 100   13   Domain YES
d1jkza_ Plant defensins - 1jkz 101   12   Domain YES
d1jxca_ Plant defensins - 1jxc 15   2   Domain YES
bpg000575 Plant Defensins II 106   19   Pending YES
bpg000680 Plant drought-induced proteins 7   3   Global homology NO
bpg005632 Plant LRR proteins (putative RLPs) 11   4   Global homology YES
bpg000016 Plant RLK TM domain 42   1   Motif NO
bpg002146 Protegrin 55   2   Conserved region YES
bpg002172 Protein kinases 280   76   Pending YES
bpg000740 RAD3 family 50   9   Pending NO
bpg000719 RAR1 10   4   Pending NO
bpg002089 RCC1 family 99   26   Pending YES
bpg002081 RCC1/Zn finger family 20   1   Pending YES
bpg002289 RDRP II 52   12   Conserved region NO
bpg000011 RIN4 10   5   Pending NO
bpg006826 RIP2 9   1   Global homology YES
bpg000554 RLP-like cluster 16   4   Pending YES
bpg001140 RNA-binding immune response proteins 30   5   Global homology YES
bpg000521 RPM1 29   8   Pending YES
bpg000520 RPM1 nterm 317   90   Domain NO
bpg000702 RPP4 22   2   Pending YES
bpg057329 RPP5-LIKE 4   1   Other NO
bpg057330 RPS4-like 45   11   Other YES
bpg002156 Saposin-like proteins 145   46   Conserved region YES
bpg002255 SEFIR/STIR 43   8   Domain NO
bpg057325 Sefir_containing_N-terminus 5   1   Other NO
bpg000682 SGT1 41   9   Pending NO
bpg057338 SIGGR 6   1   Global homology YES
bpg002253 SON1 249   34   Pending NO
bpg000082 Stress responsive dimeric alpha+beta barrel domain 43   12   Domain NO
bpg058064 Strictosidine synthase domain 512   81   Domain YES
bpg000716 TGA family 42   2   Pending NO
bpg000717 Thionin 65   8   Pending YES
bpg002097 TICAM 6   1   Global homology NO
bpg002259 TIR extended 1057   209   Domain YES
bpg011058 TIR-conserved boxes 1 and 2 1068   175   Conserved region YES
bpg020932 TIR-domain containing 611   148   Domain YES
bpg000150 TIRA (Toll interleukin receptor adaptor) 10   1   Domain YES
bpg057335 Tir_only 82   2   Other NO
bpg057339 Tir_only_adaptor_TIRAP 8   1   Global homology YES
bpg080292 TLR 258   27   Global homology YES
bpg000143 TLR1-related 73   10   Global homology YES
bpg000562 TLR3-related 67   11   Pending YES
bpg000142 TLR5 3   1   Global homology YES
bpg000151 TLR8 TM 49   10   Domain NO
bpg000074 TM domain in plant RLPs and RLKs 43   15   Pending NO
bpg000076 TM domain RLK subtype book2 55   1   Pending NO
bpg000077 TM region for plant RLPs (book 3) 22   3   Domain NO
bpg000583 TNLW: TIR-NBS-LRR-WRKY proteins (Arabidopsis) 3   1   Global homology YES
bpg000671 TNT (microbial/fungal) 34   15   Conserved region NO
bpg002135 TNT plants 3   1   Conserved region NO
bpg002615 Toll Interleukin Receptor (TIR) 792   144   Domain YES
bpg005639 Toll/interleukin-1 receptor 8 9   1   Global homology YES
bpg000006 TPR quarantaine repeat 181   17   Motif NO
bpg000053 TPR40 domain 84   4   Conserved region NO
bpg002133 TPR42 book3 795   1   Motif NO
bpg000153 TRAF6 (TNF-Receptor Associated Factor 6) 10   1   Global homology YES
bpg000003 TransMembrane from Arab RLP 46   2   Motif NO
bpg002088 Ubiquitin hydrolase 54   11   Global homology YES
bpg002085 UBP 9   3   Global homology YES
bpg002084 USP family 10   3   Global homology NO
bpg002087 USP family - book 2 34   4   Pending YES
bpg002086 Usp22 18   6   Global homology YES
bpg000705 Ve2-related 48   11   Pending YES
bpg000684 Xa21 family 217   35   Pending YES
bpg010707 XopD 4   1   Pending YES
bpg004945 XP_478746 43   10   Global homology YES
bpg010706 YOPJ 14   3   Global homology NO
bpg057328 2Tir 4   2   Global homology NO


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